{"id":993,"date":"2016-09-15T22:35:51","date_gmt":"2016-09-15T22:35:51","guid":{"rendered":"http:\/\/blogs.oregonstate.edu\/thecnidaegritty\/?p=993"},"modified":"2016-09-15T22:39:19","modified_gmt":"2016-09-15T22:39:19","slug":"life-phd-student","status":"publish","type":"post","link":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/2016\/09\/15\/life-phd-student\/","title":{"rendered":"The life of a PhD student"},"content":{"rendered":"<p class=\"p1\">I was starting to get a little jealous of Becky and Stephanie writing all the recent posts. So I&#8217;ve decided to make my own return to the blogosphere, today, by posting my answers to a few questions sent to me as part of\u00a0a high school assignment. I enjoyed taking the time to answer them, and think they fairly succinctly summarize what life is really like for me as a grad student. (hint: it&#8217;s not all splashing around in the tropics or making grand discoveries).\u00a0\u00a0So, here they are, with some minor additions and corrections:<\/p>\n<p class=\"p1\"><span class=\"s1\"><b>What does a day of work look like for you?<\/b><\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">There isn&#8217;t really any &#8216;average&#8217; day for me &#8211; during different times of the year or different stages of a project, I have very different tasks to do. I would guesstimate that I spend 40% of the year analyzing data, 20% doing lab work, 15% preparing for fieldwork, 15% doing fieldwork, and 10% doing other tasks.<\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">Data analysis is huge for me because I work with many terabytes of genetic sequence information, and have to learn and write code in multiple programming languages in order to handle it all. Sifting through that data and finding interesting patterns takes a lot of time! So on those days (which include today), I generally wake up, check the status of scripts that were running overnight, have breakfast, and then go to my office for the rest of the day to do statistics and scripting work on my computer. <\/span><span class=\"s1\">Veteran readers of this blog might remember the last few posts of mine, where I detailed some light data-wrangling and mapping tasks\u00a0that were occupying me at the time. Most of my computer work is slightly more dry than even that&#8230; But to me, the results of this work can be the most exciting part of the job! And getting scripts to run smoothly and efficiently is an extremely satisfying experience!\u00a0<\/span><\/p>\n<div style=\"width: 1090px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/www.instagram.com\/p\/BKFJGpvjAQ6\/\" target=\"_blank\"><img loading=\"lazy\" decoding=\"async\" class=\"\" src=\"https:\/\/scontent-sea1-1.cdninstagram.com\/t51.2885-15\/e35\/14134833_1780666238881941_1203831658_n.jpg\" width=\"1080\" height=\"1080\" \/><\/a><p class=\"wp-caption-text\">I suppose an average day for me looks something like this.<\/p><\/div>\n<p class=\"p1\"><span class=\"s1\">Before I can do data analysis, though, I have to collect samples and generate the data. Prior to\u00a0traveling and getting into the water for sample collection, I have to do a lot of paperwork and preparation: gathering supplies, applying for permits and travel visas, arranging housing and transportation, establishing on-site emergency procedures, brushing up on my SCUBA and first-aid skills, and researching what kinds of corals I expect to find and collect at each location. A lot of this\u00a0is by far my least favorite part of the job, and is a major reason that I&#8217;m feeling a bit burnt-out from fieldwork, lately! Paperwork and bureaucracy were not what I signed up for! But following the law and being safe are extremely important, so I spend a lot of time trying to make\u00a0sure I do everything right when I travel.<\/span><\/p>\n<div id=\"attachment_995\" style=\"width: 594px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/i0.wp.com\/blogs.oregonstate.edu\/thecnidaegritty\/files\/2016\/09\/IMG_2634.jpg\" target=\"_blank\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-995\" class=\"size-large wp-image-995\" src=\"https:\/\/i0.wp.com\/blogs.oregonstate.edu\/thecnidaegritty\/files\/2016\/09\/IMG_2634-1024x768.jpg?resize=584%2C438\" alt=\"Acquiring permits is my favorite part of the job... Wait, no, that's not quite right...\" width=\"584\" height=\"438\" srcset=\"https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?resize=1024%2C768&amp;ssl=1 1024w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?resize=300%2C225&amp;ssl=1 300w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?resize=768%2C576&amp;ssl=1 768w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?resize=400%2C300&amp;ssl=1 400w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?w=1168&amp;ssl=1 1168w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/IMG_2634.jpg?w=1752&amp;ssl=1 1752w\" sizes=\"auto, (max-width: 584px) 100vw, 584px\" \/><\/a><p id=\"caption-attachment-995\" class=\"wp-caption-text\">Acquiring permits is my favorite part of the job&#8230; Wait, no, that&#8217;s not quite right&#8230;<\/p><\/div>\n<p class=\"p1\"><span class=\"s1\">Of course, the most fun portion of my work is the fieldwork itself! There&#8217;s no point in describing that here when\u00a0you can instead watch this video:\u00a0<a href=\"https:\/\/youtu.be\/whQTKjexHCw\"><span class=\"s2\">https:\/\/youtu.be\/whQTKjexHCw<\/span><\/a>. Again,\u00a0veteran readers of this blog\u00a0will\u00a0also know what\u00a0fieldwork is like for me from my previous posts and photos.<\/span><\/p>\n<div id=\"attachment_996\" style=\"width: 594px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/i0.wp.com\/blogs.oregonstate.edu\/thecnidaegritty\/files\/2016\/09\/20160721-Other-IMG_0630.jpg\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-996\" class=\"size-large wp-image-996\" src=\"https:\/\/i0.wp.com\/blogs.oregonstate.edu\/thecnidaegritty\/files\/2016\/09\/20160721-Other-IMG_0630-768x1024.jpg?resize=584%2C779\" alt=\"Ahh, that's right, diving is the most fun part of my job!\" width=\"584\" height=\"779\" srcset=\"https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/20160721-Other-IMG_0630.jpg?resize=768%2C1024&amp;ssl=1 768w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/20160721-Other-IMG_0630.jpg?resize=225%2C300&amp;ssl=1 225w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/20160721-Other-IMG_0630.jpg?w=1168&amp;ssl=1 1168w, https:\/\/i0.wp.com\/osu-wams-blogs-uploads.s3.amazonaws.com\/blogs.dir\/1928\/files\/2016\/09\/20160721-Other-IMG_0630.jpg?w=1752&amp;ssl=1 1752w\" sizes=\"auto, (max-width: 584px) 100vw, 584px\" \/><\/a><p id=\"caption-attachment-996\" class=\"wp-caption-text\">Ahh, that&#8217;s right, <i>diving<\/i> is the most fun part of my job!<\/p><\/div>\n<p class=\"p1\"><span class=\"s1\">After collecting samples in the field, I have to process those samples in the lab here in Oregon. I often say my lab work consists mostly of moving clear liquids from one tube to another &#8211; extracting, cleaning, aliquoting, and amplifying DNA, enzymes, and\u00a0other colorless\u00a0chemicals. It&#8217;s the kind of work that becomes rather mindless once you&#8217;re experienced, and can sometimes serve as a good time to get lost in thought. Ultimately, the result of all my liquid-mixing gets placed in a DNA sequencing machine, which spits out the aforementioned terabytes of data for analysis.<\/span><\/p>\n<div style=\"width: 1090px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/www.instagram.com\/p\/BFw8cuUSm6r\/\" target=\"_blank\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/scontent-sea1-1.cdninstagram.com\/t51.2885-15\/e35\/13257141_476976369178070_1602653061_n.jpg\" width=\"1080\" height=\"1080\" \/><\/a><p class=\"wp-caption-text\">Moving liquids around in prettily-colored tubes isn&#8217;t so bad, either, though&#8230;<\/p><\/div>\n<p class=\"p1\"><span class=\"s1\"><b>Why did you choose to become a marine biologist?<\/b><\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">I had a pretty good idea that I wanted to be a scientist of some sort for as long as I can remember. I&#8217;ve also always been in love with tropical ecosystems, for some reason that I can&#8217;t explain. I think I decided more specifically on biology gradually throughout high school, during which\u00a0I had a couple of important experiences. I remember in Sophomore biology class being fascinated by the workings of the cell; how diverse proteins are and how they act like such perfect miniature robots. My AP Biology course during my Junior year was exciting and incredible to me for all sorts of reasons. And between my Junior and Senior years, I worked as an assistant in a pathogen genetics laboratory here at OSU, which kind of sealed the deal for me. Choosing marine biology was a somewhat spontaneous decision that I made when I was applying for college&#8230; I don&#8217;t actually know why, but at some point during that process, I just decided that that was the program I was looking for. It probably had something to do with having had 5 fish tanks as a kid, playing water polo and swim team, and having loved learning to SCUBA dive on a family vacation to Hawaii. I just loved being in the water and seeing the beautiful and strange animals that inhabit it. Then, after\u00a0I had started studying it, I realized just how amazing life in the ocean really is, and there really wasn&#8217;t any going back!<\/span><\/p>\n<p class=\"p1\"><span class=\"s1\"><b>What are challenges you face in your studies\/at work?<\/b><\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">I think right now my biggest challenge is the communication of my work to my fellow scientists and the public. That communication is really the most important part of a scientist&#8217;s work; we get paid by publicly-funded grants so that we help everyone gain a better understanding of the world around us. Our primary mode of communication is through the publication of peer-reviewed manuscripts, and right now, I have a lot of discoveries that I need to share, that I&#8217;m struggling to write about. Part of that struggle is due to some perfectionism: nothing in science is ever 100% proven, and I always want to find better evidence and consider every possible alternative before declaring to the world that something is true in a publication. But at some point, I will need to write things up according to my current understanding, while simply acknowledging that parts of that understanding are bound to change.<\/span><\/p>\n<p class=\"p1\">This blog is another important form of communication for me, because I get to speak more freely to the public. But communicating our science to the public is also a major challenge. A lot of people want to live vicariously and hear about the fun parts of my job, but if that&#8217;s all I ever talk about, other people start to wonder whether my job is worth the tax money. So I try hard in my posts to blend fun stories with useful educational material, and it&#8217;s not at all easy for me.<\/p>\n<p class=\"p1\"><span class=\"s1\"><b>Do you work more in a lab setting or out in the ocean?<\/b><\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">As per question 1, the majority of my work is not out on the ocean. But a significant fraction of it has been! As my project progresses, I will be spending less time on the water, but I&#8217;m really not complaining at this point. It&#8217;s a lot of fun, but it&#8217;s exhausting and disruptive to my career and personal life.\u00a0<\/span><\/p>\n<p class=\"p1\"><span class=\"s1\"><b>What is your favorite part about being a marine biologist?<\/b><\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">I really like to think that my work can somehow contribute to a better understanding of the world. Coral reefs in particular are in a real mess at the moment, facing threats from pollution, overfishing, climate change, etc., and I want to do what I can to learn about them, and maybe even help them, before they&#8217;re gone. Of course, experiencing them in-person during fieldwork is also amazing!<\/span><\/p>\n<p class=\"p1\"><span class=\"s1\">If you are more curious, check out\u00a0a summary of my work here:\u00a0<a href=\"http:\/\/oregonstate.edu\/microbiology\/vegathurberlab\/global-coral-microbiome-project\"><span class=\"s2\">http:\/\/oregonstate.edu\/microbiology\/vegathurberlab\/global-coral-microbiome-project<\/span><\/a>,\u00a0and also the videos that we&#8217;ve been producing during that project, here:\u00a0<a href=\"http:\/\/marinestudies.oregonstate.edu\/global-coral-microbiome-project\/\"><span class=\"s2\">http:\/\/marinestudies.oregonstate.edu\/global-coral-microbiome-project\/<\/span><\/a>.<\/span><\/p>\n<p class=\"p1\">Thanks for the questions, Sophia!<\/p>\n","protected":false},"excerpt":{"rendered":"<p>I was starting to get a little jealous of Becky and Stephanie writing all the recent posts. So I&#8217;ve decided to make my own return to the blogosphere, today, by posting my answers to a few questions sent to me &hellip; <a href=\"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/2016\/09\/15\/life-phd-student\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":5242,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[5],"tags":[],"class_list":["post-993","post","type-post","status-publish","format-standard","hentry","category-science"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p4DZuN-g1","jetpack_likes_enabled":false,"jetpack-related-posts":[],"_links":{"self":[{"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/posts\/993","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/users\/5242"}],"replies":[{"embeddable":true,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/comments?post=993"}],"version-history":[{"count":4,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/posts\/993\/revisions"}],"predecessor-version":[{"id":999,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/posts\/993\/revisions\/999"}],"wp:attachment":[{"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/media?parent=993"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/categories?post=993"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/dev.blogs.oregonstate.edu\/thecnidaegritty\/wp-json\/wp\/v2\/tags?post=993"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}