Category Archives: College of Agricultural Sciences

Keeping Oregon Forests Green: What Swiss Needle Cast Disease is Teaching Us About Forestry

I’ll never forget driving through the steep and windy I5 corridor of the Klamath Mountains when I moved to Oregon. Wet roads bordered by thick fog with protruding trees that were lusciously green. Very, very green. This concept of ‘Keeping Oregon Green’ started as a fire prevention act, and Oregon’s color is a quality that visitors and residents adore. Unfortunately there is sleeping giant that is gaining momentum, slowly turning Oregon’s forests from green to yellow with an eventual needle fall of the iconic state tree. This color change is from a microscopic fungus that all Douglas-fir trees have around the world, but for some reason it’s only harming the trees along the Oregon coast range. Our guest, a 4th year PhD student Patrick Bennett, is peeling away the layers of complexity to reveal why Oregon’s green forests are dwindling.

Aerial view of Douglas-fir stand with Swiss needle cast near Tillamook, Oregon. Chlorotic (yellow) foliage is a major symptom of the disease.

Douglas-fir needles with pseudothecia (fruiting bodies) of the fungus (Phaeocryptopus gaeumannii) emerging from the stomata.

It is estimated that Swiss Needle Cast disease is affecting nearly 1,000,000 acres in Oregon and Washington alone leading to economic losses estimated at $128 million per year. The fungus covers the stomata, openings in the needles, used to exchange air and water essential for plant metabolism. As more of these stomata become clogged the tree cannot make enough glucose so the needle dies, turns yellow, and eventually the needle falls off entirely. Douglas-fir trees typically keep needles for five years, but in heavily affected areas the needles last one year before falling off leaving the tree extremely thin and frail. Even though the fungus does not directly cause death, it leaves our iconic state tree highly susceptible to drought, beetles, nutrient limitations, and wildfires.

This disease was first discovered in Switzerland, hence the name Swiss Needle Cast, in the 1920’s. At that time it was only negatively affecting Douglas-fir trees planted outside their native habitat. But since the 1980’s the natively planted Douglas-fir trees, within a narrow band parallel to the coast range, are showing annual growth decreases by as much as 50%. Recently there have been advancements in molecular biology and computing power that allow researchers to identify the genetic heritage of pathogens. Using these tools scientists can focus on population genetics to figure out why there is such a discrete area affected along the Oregon coast range. Some evidence points to warming winters and fungal-subspecies expansion as reasons for the spread of this fungal disease. But Patrick has indications to suggest it’s death by a thousand cuts and begs the question of whether the future of forestry is in danger.

Growing up in southern California Patrick wasn’t exposed to the forests he studies today. It wasn’t until he attended Humboldt State University where he got his first exposure to towering canopies and ecology. His first research experience was in the Lassen Volcanic National Park in California where his advisor, Dr. Patricia Siering, pushed him to develop his own scientific study. Needless to say he was hooked on science and after taking a mycology class he also knew he was jazzed on studying mushrooms so he continued his passions that lead him to Oregon State University.

Dr. Patricia Siering (Humboldt State University – Biology Department) collecting boiling hot sulfuric acid from Boiling Springs Lake in Lassen Volcanic National Park in Northern California with the help of undergraduates and graduate students.

Patrick Bennett is a 4^th year PhD student in Dr. Jeff Stone’s lab in the department of Botany and Plant Pathology housed in the College of Agricultural Sciences where he is investigating how population genetics can be used to better understand the factors contributing to the recent emergence of Swiss Needle Cast as a damaging forest pathogen in the native range of Douglas-fir. Be sure to tune in Sunday April 30^th at 7PM on KBVR Corvallis 88.7FM or by listening live.

Dirt: It’s under all of us!

We depend on the humble soil beneath our feet to grow the cotton in our shirts, feed the world with fruits and vegetables, and growing all the commodities necessary to make beer and whisky alike! Given the range of functions soils have on earth it’s no surprise soils themselves have very different colors, sizes, and even smells! If we look closely at soils, especially their horizons resembling layers of a cake, they can be read to ascertain how nutrients got there, how long those nutrients can last for the plants above, and what to do if an area needs to be remediated.

Great soil profile showing the burial of an old soil (reddish-grey) formed on a basalt flow. The soil surface was buried by volcanic ash ejected during the cataclysmic eruption of Mt. Mazama which is now Crater lake. (Eagle Cap Wilderness, Summer 2015)

12cm is of soil is precariously protected from alpine winds by a thin gravel mulch (Summer 2015).

Even though humans rely on soils for our health and comfort, we too often take soil for granted. But our guest reminds us exactly how essential soils are to life! Vance Almquist is a PhD student joining us from the Crops and Soil Science Department, in the College of Agricultural Sciences, and focuses on how soils develop in wildland environments, as well as how to read soils in order to understand its historical record keeping. Vance is also known as a soil pedologist, or someone who studies soil genesis, its transformations, and specializes in how to read the language of soil horizons. You might ask, ‘why do we need to know the history of a soil in order to use it?’

Human society developed in the ‘Cradle of Civilization’, an area known as the Fertile Crescent because (as you guessed it) the soils were extraordinary fertile! To practice higher-level agriculture, early settlers built levees to block the floodwaters. But when they prevented the annual floods soils were no longer getting enough nutrients, salts started to build up, and eventually it lead to a collapse of civilizations. If only they understood the soils’ history, they would’ve know the annual floods are essential to maintaining their prosperous way of life. If we know how soils develop, and how to read them, these are the kinds of problems we can avoid in the future.

Hiking toward China Cap in the Eagle Cap Wilderness to describe and map soils (Summer 2016)

Vance grew up in Utah and before yearning to be a soil scientist he worked at a brewery, trained dogs, and is a master forklift driver. High school was never terribly fun because nothing really challenged him, but he continued to enroll in classes at the local community college. He was really turned onto botany because he always went mushroom hunting as a kid and he saw the practical application of knowing which plants we share the world with. Then he realized how soil science was at the intersection of biology, chemistry, and physics. Here he found his calling because he also noticed how much our economy was overlooking the usefulness of soils and wanted to continue to explore this idea further in graduate school.

Not only can understanding soils avert disasters, but ranges of scientific disciplines are dependent on soils. A botanist can be interested in finding rare flowers, a hydrologist is interested in finding out how much sediment is mucking up the streams, and a meteorologist wants to know how much CO₂ is released into atmosphere. Specific soil properties are needed for certain plants to grow, some soils erode faster than others, and soils can become a source, instead of a sink, of CO₂ emissions! Soils are integrators of many scientific disciplines and I hope you join us to discuss this with Vance. You can tune in on Sunday November 20^th at 7PM on 88.7FM or listen live here.

Mosquito soup in the Brazilian rainforest

Fieldwork in the Brazilian Amazonia meant continuously trying to outsmart their savviest opponents…ants!

Deforestation in Brazil due to cultivation of monoculture crops, such as soybean, has profoundly impacted wildlife populations. In the lab of Taal Levi in the Department of Fisheries and Wildlife, wildlife biologist Aimee Massey has adopted a quantitative approach to studying this impact. During her first and second year of graduate school, Aimee traveled to Brazil for fieldwork and data collection, collaborating with researchers from Brazil and the UK. During this trip, she collected 70,000 biting flies, including mosquitoes and sandflies, by engineering 200 fly traps constructed from 2-liter soda bottles, netting, and rotting beef. Aimee installed biting traps throughout 40 individual forest patches, which are regions delineated by their physical characteristics, ranging approximately in size from the OSU campus to the state of Rhode Island.

Who knew fieldwork could be such a balancing act?!…especially when trying to avoid poisonous insects and thorns. Let’s hope the next branch Aimee reaches for is not of the slithering snake kind!

Subsequent DNA analysis on biting flies provides a relatively unbiased source of wildlife tracking, since mosquitoes serve as a repository of DNA for the wildlife they have feasted upon. DNA analysis also provides information regarding diseases that may be present in a particular patch, based on the bacterial and viral profile. For example, sandflies are carriers of protozoa such as leishmania, which cause the disease leishmaniasis. To analyze DNA, Aimee uses bioinformatics and metabarcoding, which is a technique for assessing biodiversity from an environmental sample containing DNA. Different species of animals possess characteristic DNA sequences that can be compared to a known sequence in an online database. By elucidating the source of the DNA, it is possible to determine the type of wildlife that predominates in a specific patch, and whether that animal may be found preferentially in patches featuring deforestation or pristine, primary rain forest.

Learning about human/wildlife interactions while drinking tea with camel’s milk in Laikipia, Kenya.

Aimee completed her undergraduate studies at University of Maine, where she quickly discovered she wanted to study biology and chemistry in greater depth. She planned to attend med school, and was even accepted to a school in her junior year; however, an introductory fieldwork course in Panama spent exploring, doing fieldwork, and trekking made a deep impression on her, so she decided to apply to graduate school instead. Aimee completed a Masters degree in environmental studies at the University of Michigan, during which time she spent 4 months at the Mpala Research Centre in the middle of the Kenyan plateau, just north of the Masai Mara. Following completion of her Masters degree, Aimee spent a year as a research assistant at the University of New Hampshire working with small mammals. Before beginning her PhD studies at OSU, Aimee spent two months in Haines, Alaska doing fieldwork with her future PI, Taal Levi. After she finishes her PhD, Aimee plans to focus on conservation work in New England where she is originally from.

Having fun after fieldwork; Aimee’s eulachon fish catch of the day in Haines, Alaska. One is better than none!

Tune in on October 23rd, 2016 at 7PM on the radio at 88.7FM KBVR, or stream live, to hear more about Aimee’s adventures in Brazil, and why her graduate work is shaping our understanding of how deforestation impacts biodiversity.

A Big Punch at the Smallest Scale

How do you connect the dots between sunscreen, coatings on reading glasses, and medicine? Nanoparticles! More and more the potential uses of nanotechnology are moving forward. For example the use of nanoparticles in sunscreen (i.e. zinc dioxide) helps to increase its protective coverage time and its ability to block harmful UVA rays. Another emerging field of nanotechnology hopes to decrease the economic burdens of growing enough food for a booming world population. Matt Slattery joins us from the College of Agricultural Sciences Department of Environmental and Molecular Toxicology to discuss his flourishing endeavor to ensure that technology does not outpace environmental safety.

Matt reflecting at Panther Creek Falls.

Growing food takes a serious amount of commitment, time, and money; and one of the major factors dictating a successful harvest is the timing and effectiveness of the pesticides applied to a crop. Over a billion (1,000,000,000) lbs of the active ingredient in pesticides are applied in the USA alone (EPA)! With the help of nanotechnology we can decrease the necessity of repeated pesticide application and still get the same level of productivity from the land. When pesticides are applied, they generally have a very short residence time, and are only effective in fighting pests for a week or two. However, by encapsulating pesticides in multi-layered nanoparticles that slowly releases a small quantity of pesticide over time, you can get a far more consistent application instead of the boom-and-bust strategy that’s currently used. Another major benefit of nanoparticle delivered pesticides is that farm workers are less exposed to the chemicals because application of the pesticide is less frequent and safer. This encapsulation method is not just for an agricultural application but has the potential to be used in any platform that needs a “time-release” delivery, but much work is still required to make sure we really understand how they interact with the environment.

Matt having a grand time play his ukulele in Halong Bay, Vietnam

Matt having a grand time playing his ukulele in Halong Bay, Vietnam.

To no surprise, it takes someone special to merge multiple scientific disciplines into one research project, and our guest fits the bill! Matt has always been interested in science, but it was the interdisciplinary nature of environmental toxicology that requires the understanding of how chemistry, physics, and the environment can affect the biology and health of an organism. His first experience with the contamination of the Puget Sound in Bellingham, while attending Western Washington University, was a catalyst that launched him to eventually work with the Lummi Tribe. There he joined the discussion of how salmon as a major source of food, as well as their cultural foundation, could be damaged by bioaccumulation from the contaminated estuary. This intersection of science and outreach convinced Matt he wanted to pursue a higher degree, but he decided to go abroad for a short time before putting his nose to the grindstone!

You’ll have to tune in to hear where Matt’s explorations led him, and how nano-technology is becoming an increasing popular method for chemical delivery across scientific disciplines and industries. You can listen on October 16th 2016 at 7PM on the radio at 88.7FM KBVR, or stream live.

Oops that’s a mistake.. No, that’s a new detox pathway!

It’s graduation season and for those folks who think grad school isn’t for them, take a look at this week’s guest who is one of the first to participate in the 4+1 Bioresource Research program in the College of Agricultural Sciences allowing students to complete their undergraduate and graduate degrees in 5 years! Taylor Hughes is an Oregonian native who grew up testing the river through his backyard for organic pollutants that would eventually lead him to Oregon State University scholarship. Like most recent graduates, high school and college alike, he didn’t know exactly which career path to take. He was looking towards environmental sciences after a pivotal class in high school that forced him identify an ecological system and develop a method to test a hypothesis; essentially he was a scientist in the making!

Chasing giant Fall Chinook on the Umpqua River in my hometown

Fast-forward through the pre-requisite classes, and four years at OSU, and Taylor is now a recent graduate of the Bioresource Research degree focusing on toxicology. The degree requires some research hours where he worked on a senior thesis focusing on how naturally produced bodily chemicals were influencing our bodies’ endocannabinoid receptors system that work to keep our internal functions stable. This was Taylor’s first exposure to the “-omics” branch of science, some common examples include genomics and metabolomics.

This research focuses on biomolecules of specific functions or from specific species, however the vast number of molecules produced by our biology leads to massive datasets that tend to be hypothesis generating research rather than hypothesis driven research. What does this mean for the rest of us? It leads to unintended discoveries, answers to questions we didn’t know we had. Now that Taylor has returned to OSU and focusing on lipidomics, he has found as a potentially new detoxification pathway that has previously been unknown!

Tune in on tonight, June 5^th at 7PM on 88.7FM or online to listen to us talk to the Roseburg-native Taylor Hughes about new understandings in how our bodies can remove toxic by-products.

Competing at a BBQ Cook-off fundraiser that raises money for Doernbecker’s Children’s hospital

Go play in the dirt!

Shannon harvesting potatoes in Corvallis, OR

Over the last five years the modern agricultural economy has become a hot topic to debate. As the population continues to grow, so to will the need to produce more food to feed the world. There are many ideas about how to meet this demand including organic farming, GMOs, hydroponics, among others. When most people discuss the pros and cons of different farming practices, the conversation usually centers around human health. How much pesticide is making it into my body? Are there more nutrients in organically grown produce? Was Monsanto involved? These are just some of the questions you’ve probably heard at your grocery store or local farmer’s market. Shannon Andrews has spent the last ten years working and researching in many disciplines within the agriculture industry and she’s asking a different question; how can we increase agronomic value and reduce the negative environmental impacts of agricultural production?

Corn harvest crew in Klamath Falls, OR

As it turns out, that is a very important question to be asking. Many of the farming practices that have enabled improvements in crop yield are also detrimental to the environment, specifically the soil. In an attempt to combat these ill effects, soil scientists are studying the effects of tilling, organic vs conventional farming, and nutrient retention in the soil, among other things. If we can better understand the impact of our farming practices, then we can potentially change or curtail them to generate a more sustainable agricultural economy. Shannon, and other soil scientists, are hoping to make further improvements to sustainable agriculture by creating recycled fertilizers that have reduced environmental impact and don’t affect crop yield.

Potatoes growing in Madras, OR. Crops in the front are growing without Nitrogen added, while the crops in the back are growing in algae fertilizer

With a diverse background of undergraduate studies in marine biology, wildlife biology, agricultural studies, and animal science, as well as work experience on a beef ranch and with trading commodities in the feedstock industry, Shannon has the knowledge to create these fertilizers of the future. All of these different experiences have led to a trifecta of exciting new ideas on how to improve the fertilizers used in farming. Through her master’s work, and now into her doctoral research, Shannon is working to optimize the soil chemistry for maximum crop growth and minimal environmental impact. Her early graduate school work with Dr. Dan Sullivan, studying soil pH showed that the use of sulfur in compost fertilizer makes it possible to grow blueberries, which turn out to be quite a fickle fruit. Shannon then turned her attention to another recycled fertilizer, algal meal, a waste product from algae-based biodiesel production. During her work in Dr. David Myrold’s lab, Shannon showed that algae based fertilizer has a reduced environmental impact while maintaining corn yields. Shannon is now finishing up her doctoral research by studying the water absorption properties of soil with Dr. Marcus Kleber and Dr. Maria Dragila.

After all her research and work experience, Shannon is uniquely positioned to study the agriculture industry. It will be important to consider perspectives from people like Shannon so that we can quantify and improve farming practices as we move forward in the 21st century. After all, agriculture is one of the most important industries in the world and that’s not about to change as the global population, and the need for food, increases.

We’ll talk with Shannon about her crop soil research and how she got into this field, Sunday May 22nd at 7pm PST on 88.7 KBVR-FM.

How to make grass greener on the other side

Clint is showing us how his field trials are set up and the major benefits his applications are having on the grass.

Turfgrass managers are responsible for the beautiful playing surfaces you are accustomed to seeing for sports including football, soccer, tennis, baseball, rugby, lacrosse, golf, well you get the picture!

The smell of freshly cut grass can lead an unlucky bunch to reach for Kleenex and the allergy meds, while others get a smile on their face as they prepare for game time. Little did you know, those ‘wet-green’ smells are organic compounds to help the grasses (among many other functions) recover from decapitation and fungal infections. Minimizing fungal infections on your lawn are manageable, but what if you were in charge of keeping an entire golf course in perfect shape all year long? This week our guest is Clint Mattox who has worked in Europe and the US in pursuit of managing turfgrass to its highest potential while also being cognizant of the environmental and economic impacts of pesticides and fungicides. Clint is now a PhD student in the College of Agricultural Sciences working with Dr. Alec Kowalewski in the Department of Horticulture focusing on turfgrass management in the Pacific Northwest. You can also follow Clint on Twitter @mattoxgolf.

Clint Mattox does integrated pest management and fungicide research on turfgrass at Lewis Brown Horticulture Research Farm in Corvallis, Oregon.

If growing a perfectly uniform surface wasn’t hard enough, a constant hurdle turfgrass managers are facing are the detrimental impacts of a fungal pathogen, commonly called Microdochium Patches, that can have an annual cost of approximately $20,000 for each golf course! To add insult to injury, certain areas limit the type and quantity of fungicide than can be applied forcing turfgrass managers to seek new solutions.

Clint recently finished a Masters of Science with some promising results for how we can effectively manage the infection of Annual Blue Grass (the primary grass for golf courses in this climate) from this formidable fungus while also moving towards organic methodologies. Using a combination of old and new practices he’s fine-tuning current management strategies with the hopes of being able to eliminate the use of fungicides on golf courses.

Tune in on Sunday April 3^rd at 7PM on 88.7FM, or online, to hear about the pursuit of fungicide-free turfgrass management.

**All photos are credited to Steven Ward from the OSU Extension Service.

CSI-Cultivated Squash Investigator: Murder in the Pumpkin Patch

Hannah Rivedal, PhD student in Botany and Plant Pathology, started working with plants before college in her neighborhood greenhouse and plant nursery. She loved growing and caring for plants that were destined to brighten her neighbors’ yards. Hannah believes, “You can’t be in a bad mood when you are holding a bunch of Petunias!” College-decision time neared and as a well-mannered Wisconsin go-getter, Hannah began college at University of Wisconsin, Madison seeking a degree in Genetics with a minor in Japanese which would lead nicely into medical school. All the while, she would travel back to her hometown on holidays and school breaks to work at the greenhouse where she first fell in love with Botany.

Hannah preparing an experiment in the greenhouses at OSU.

Mid-college Hannah has a revelation after taking a Horticulture class and doing a little volunteer work at the hospital that Pre-med is not the path for her. In total “Hannah-fashion” she takes the reins and sets up informational interviews with eleven academic advisors at UW Madison to try and figure out what she was going to do, and she knows three things: 1) she LOVES plants, 2) she enjoys the challenge of diagnostics, and 3) she loves the reward of getting her hands dirty and working toward a solution. She decided to switch her major to Plant Pathology because it had all of these elements and more! She loves that Plant Path allows her to work directly with growers.

Hannah got her feet wet in “the biz” through undergraduate research in many different labs in the Plant Pathology department, and completed a senior capstone project in a plant disease tolerance lab focused on potatoes. When her college career was nearing an end, Hannah knew that to become a fully-grown Plant Pathologist she would need to continue with a graduate degree.

Hannah in her natural habitat among her squash seedlings.

Hannah is currently working on many angles of this case under the supervision and guidance of her major advisor, Ken Johnson. Hannah hopes that her research with in Plant Pathology will lead to a position as a Plant Pathologist at an extension station working with growers and conducting research that is tailored to their unique situation.

That brings us to this breaking report: We have a Squash Killer on the loose! Willamette Valley growers want to know what is killing their Winter Squash. Plant Pathogens beware: Hannah Rivedal- CSI (Cultivated Squash Investigator) is on the case!

Victim: Cucurbit species, specifically Winter Squash (Cucurbita maxima), important pumpkin relative responsible for supplying the Willamette Valley and the surrounding region with ‘pumpkin’ soup, seeds, and pie filling. Did you know good’ole Jack-o-lantern pumpkin seeds are not the ones you find in the store? Those are most-likely Winter Squash seeds!

Symptoms: Wilting, crown rot, and root rot. Could cause a 100% yield loss.

Suspects: a soil borne disease that could be Fusarium oxysporum (Wilt pathogen), Fusarium solani (Rot pathogen), Plectosphaerella cucumerina (General wilt pathogen), or a combination.

Here all about it, this weekend on Inspiration Dissemination!

Hannah posing with some big beautiful Winter Squash Summer 2015.

Tune in on Sunday, March 13 at 7 pm to hear more from our own OSU Squash Sleuth, Hannah Rivedal, or stream the show live at www.kbvr.com/listen.

Winter squash collected and awaiting diagnosis!

Orange you glad you have scientists?

Although many students know the Linus Pauling building, few know of the ridicule he faced towards the end of his career for pursing the effects of high dose Vitamin C on the human body and its implications for cancer treatment. Fast-forward a few decades and the tune has changed in scientists around the world as we begin uncovering the mechanisms of how Vitamin C influences cancer cell propagation. One of these projects is led by our guest this week Matt Kaiser who began this research project as an undergraduate which has helped make sense of why these pharmacological dosing levels of Vitamin C aid in targeting tumor cells while simultaneously allow the functioning of normal cells to remain uninhibited.

Matt has already presented at a professional conference in Boston, was an invited speaker at OSU’s TEDx event in 2015, helped start a philanthropy to donate money to OHSU, and pursued a six-month internship with one of the largest medical institutions in the country.. and he’s not done yet!

Currently Matt is working under Nancy Kerkvliet in the department of Environmental and Molecular Toxicology on a new project that can have breakthrough immunotherapy applications to help treat individuals with autoimmune diseases such as diabetes or multiple sclerosis.

You can see some of Matt’s photography work that helped contribute to Phil Knight’s Cancer Challenge by finding him on Instagram @backyard_oregon or on his website.

Join us Sunday, January 10^th at 7PM to hear more about Matt’s research and his astonishing undergraduate career that has launched him to fame on the TED stage. Tune in to KBVR Corvallis 88.7FM or stream the show live!

When you can’t see the soil for the forest

Did you know that December 5th is World Soil Day? It’s only fitting that we would feature Kris Osterloh, a 3rd year Ph. D. student of Jay Noller in the department of Crop and Soil Science.

A soil core is carefully measured in the field. The data from this core and the surrounding ecology will help construct a model to understand the soils in the Willamette Valley National Forest

A soil core is carefully measured in the field. The data from this core and the surrounding ecology will help construct a model to map the soils in the Willamette Valley National Forest

Soil is more than just dirt in the ground, it’s rich and vibrant with life, and there are many, many different types of soil on this planet. Our soil is the reason civilization can exist, or as FDR so eloquently put it:

The Nation that destroys its soil destroys itself.

– Franklin D Roosevelt, 1937

Tonight at 7PM, Kris Osterloh will talk about his passion for soils and his research using computer models to rapidly map and understand the development of soils in the Willamette National Forest. With this knowledge in hand, we can understand how we can better manage the land to protect the soil and everything that comes from it.

Tune in Sunday, December 6th at 7PM Pacific on 88.7FM or stream at http://kbvr.com/listen to hear Kris’ tale of adventure, leadership, and science!

Kris Osterloh pauses for reflection.